Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H3A0S5_LATCHUncharacterized protein. (547 aa)    
Predicted Functional Partners:
B9D1
B9 domain containing 1.
    
 0.994
TMEM67
Transmembrane protein 67.
     
 0.992
MKS1
MKS transition zone complex subunit 1.
    
 0.985
TCTN1
Tectonic family member 1.
    
 0.970
TMEM216
Transmembrane protein 216.
     
 0.968
B9D2
B9 domain containing 2.
    
 0.903
TMEM231
Transmembrane protein 231.
      
 0.897
NPHP1
SH3 domain-containing protein.
    
 0.897
H3ABW2_LATCH
C2 domain-containing protein.
    
 0.890
CC2D2A
Coiled-coil and C2 domain containing 2A.
    
 0.890
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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