Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H3A0S6_LATCHZgc:103697. (181 aa)    
Predicted Functional Partners:
CACTIN
Cactin, spliceosome C complex subunit.
    
 0.840
FAM32A
Family with sequence similarity 32 member A.
   
 
 0.748
PRKRIP1
PRKR interacting protein 1.
   
 
 0.713
SDE2
SDE2 telomere maintenance homolog.
   
 
 0.710
FAM50A
Family with sequence similarity 50 member A.
     
 0.689
SLU7
SLU7 homolog, splicing factor.
   
 
 0.678
SYF2
SYF2 pre-mRNA splicing factor.
     
 0.671
PPIG
Peptidylprolyl isomerase G.
     
 0.660
NKAPL
NFKB activating protein like.
     
 0.649
PPIL3
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
     
 0.645
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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