STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VAMP8Vesicle associated membrane protein 8. (104 aa)    
Predicted Functional Partners:
STX17
Syntaxin 17.
   
 0.999
SNAP29
Synaptosome associated protein 29.
   
 0.997
VTI1A
Vesicle transport through interaction with t-SNAREs 1A.
   
 0.994
STX5
Syntaxin 5; Belongs to the syntaxin family.
    
 0.977
VPS39
VPS39 subunit of HOPS complex.
    
 
 0.975
STX8
Syntaxin 8.
    
 0.974
ITSN2
Intersectin 2.
     
 0.973
VPS16
Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.
    
 
 0.969
VTI1B
Vesicle transport through interaction with t-SNAREs 1B.
   
 0.969
GAK
J domain-containing protein.
   
 
  0.965
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.