Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDH12Cadherin 12; Cadherins are calcium-dependent cell adhesion proteins. (727 aa)    
Predicted Functional Partners:
CDH8
Cadherin 8; Cadherins are calcium-dependent cell adhesion proteins.
  
 
0.948
CDH24
Cadherin 24; Cadherins are calcium-dependent cell adhesion proteins.
  
 
 
0.931
CTNNB1
Catenin beta 1.
    
 0.911
CDH7
Cadherin 7; Cadherins are calcium-dependent cell adhesion proteins.
  
 
 
0.866
CDH11
Cadherin 11; Cadherins are calcium-dependent cell adhesion proteins.
  
 
 
0.846
ABCB10
ATP binding cassette subfamily B member 10.
    
 
 0.807
CDH18
Cadherin 18; Cadherins are calcium-dependent cell adhesion proteins.
   
 
 
0.800
H3A2E9_LATCH
Uncharacterized protein.
   
 0.800
H3AU51_LATCH
Uncharacterized protein.
   
 0.800
CTNNA1
Catenin (cadherin-associated protein), alpha 1.
   
 0.800
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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