Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LRFN5Leucine rich repeat and fibronectin type III domain containing 5. (776 aa)    
Predicted Functional Partners:
TRAPPC6B
Trafficking protein particle complex 6B.
   
  
 0.686
PNN
Pinin, desmosome associated protein.
      
 0.653
FBXO33
F-box protein 33.
      
 0.606
LOC102352047
Trafficking protein particle complex 6b-like.
   
  
 0.594
NUDC
Nuclear distribution C, dynein complex regulator.
     
 0.593
IL1RAPL1
Interleukin 1 receptor accessory protein like 1.
   
 0.580
LOC102352021
LAM_G_DOMAIN domain-containing protein.
   
 0.542
LRRC61
Leucine rich repeat containing 61.
    
 0.538
NR0B1
Nuclear receptor subfamily 0 group B member 1.
    
 
 0.506
H3B3W9_LATCH
Uncharacterized protein.
      
 0.501
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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