Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102351388Cathepsin L.1; Belongs to the peptidase C1 family. (333 aa)    
Predicted Functional Partners:
LOC102358477
Uncharacterized protein; Belongs to the peptidase C1 family.
  
 
 
0.908
LOC102360396
Si:dkey-26g8.5; Belongs to the peptidase C1 family.
  
  
 
0.903
BCL2L1
BCL2 like 1.
     
 0.901
CTSD
Cathepsin D; Belongs to the peptidase A1 family.
   
 0.810
LOC102355307
Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.
   
 0.810
CTSB
Cathepsin B; Belongs to the peptidase C1 family.
  
0.760
LGMN
Legumain.
   
 
 0.741
TLR9
Toll-like receptor 9.
     
 0.663
BIRC2
Baculoviral IAP repeat containing 2.
     
  0.650
LOC102346472
Uncharacterized protein.
     
  0.650
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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