H3A129_LATCH protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

H3A129_LATCH

Uncharacterized protein. (385 aa)

Predicted Functional Partners:

TRAF5

0.842

TRAF3

0.785

H3AZ94_LATCH

0.785

TRAF2

0.774

TRAF1

0.774

H3B7S8_LATCH

0.774

RUBCNL

0.672

ST3GAL6

0.644

TNFRSF9

0.641

SLC15A4

0.605

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H3A129_LATCH	H3AZ94_LATCH	ENSLACP00000003350	ENSLACP00000014965	Uncharacterized protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.785
H3A129_LATCH	H3B7S8_LATCH	ENSLACP00000003350	ENSLACP00000017949	Uncharacterized protein.	TNF receptor-associated factor.	0.774
H3A129_LATCH	RUBCNL	ENSLACP00000003350	ENSLACP00000011793	Uncharacterized protein.	Rubicon like autophagy enhancer.	0.672
H3A129_LATCH	SLC15A4	ENSLACP00000003350	ENSLACP00000021564	Uncharacterized protein.	Solute carrier family 15 member 4.	0.605
H3A129_LATCH	ST3GAL6	ENSLACP00000003350	ENSLACP00000017482	Uncharacterized protein.	ST3 beta-galactoside alpha-2,3-sialyltransferase 6; Belongs to the glycosyltransferase 29 family.	0.644
H3A129_LATCH	TNFRSF9	ENSLACP00000003350	ENSLACP00000010264	Uncharacterized protein.	TNF receptor superfamily member 9.	0.641
H3A129_LATCH	TRAF1	ENSLACP00000003350	ENSLACP00000015272	Uncharacterized protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.774
H3A129_LATCH	TRAF2	ENSLACP00000003350	ENSLACP00000011356	Uncharacterized protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.774
H3A129_LATCH	TRAF3	ENSLACP00000003350	ENSLACP00000010314	Uncharacterized protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.785
H3A129_LATCH	TRAF5	ENSLACP00000003350	ENSLACP00000017309	Uncharacterized protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.842
H3AZ94_LATCH	H3A129_LATCH	ENSLACP00000014965	ENSLACP00000003350	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	Uncharacterized protein.	0.785
H3AZ94_LATCH	H3B7S8_LATCH	ENSLACP00000014965	ENSLACP00000017949	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	TNF receptor-associated factor.	0.733
H3AZ94_LATCH	TNFRSF9	ENSLACP00000014965	ENSLACP00000010264	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	TNF receptor superfamily member 9.	0.595
H3AZ94_LATCH	TRAF1	ENSLACP00000014965	ENSLACP00000015272	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.733
H3AZ94_LATCH	TRAF2	ENSLACP00000014965	ENSLACP00000011356	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.733
H3AZ94_LATCH	TRAF3	ENSLACP00000014965	ENSLACP00000010314	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.903
H3AZ94_LATCH	TRAF5	ENSLACP00000014965	ENSLACP00000017309	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.841
H3B7S8_LATCH	H3A129_LATCH	ENSLACP00000017949	ENSLACP00000003350	TNF receptor-associated factor.	Uncharacterized protein.	0.774
H3B7S8_LATCH	H3AZ94_LATCH	ENSLACP00000017949	ENSLACP00000014965	TNF receptor-associated factor.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.733
H3B7S8_LATCH	TNFRSF9	ENSLACP00000017949	ENSLACP00000010264	TNF receptor-associated factor.	TNF receptor superfamily member 9.	0.741