LOC102346166 protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC102346166

Ubiquitin-like domain-containing protein. (95 aa)

Predicted Functional Partners:

FAU

0.999

RPS15

0.988

RPS2

0.988

RPS3

0.987

RPL27A

0.987

RPS10

0.987

RPS20

0.986

RPL31

0.986

RPL36

0.986

RPL23A

0.985

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
FAU	LOC102346166	ENSLACP00000008505	ENSLACP00000003410	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ubiquitin-like domain-containing protein.	0.999
FAU	RPL23A	ENSLACP00000008505	ENSLACP00000008909	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal protein L23a.	0.999
FAU	RPL27A	ENSLACP00000008505	ENSLACP00000018889	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	0.999
FAU	RPL31	ENSLACP00000008505	ENSLACP00000015451	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal protein L31.	0.999
FAU	RPL36	ENSLACP00000008505	ENSLACP00000017212	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.999
FAU	RPS10	ENSLACP00000008505	ENSLACP00000019580	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal protein S10.	0.999
FAU	RPS15	ENSLACP00000008505	ENSLACP00000010875	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.999
FAU	RPS2	ENSLACP00000008505	ENSLACP00000015049	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.999
FAU	RPS20	ENSLACP00000008505	ENSLACP00000004740	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	Ribosomal_S10 domain-containing protein.	0.999
FAU	RPS3	ENSLACP00000008505	ENSLACP00000006908	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.999
LOC102346166	FAU	ENSLACP00000003410	ENSLACP00000008505	Ubiquitin-like domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
LOC102346166	RPL23A	ENSLACP00000003410	ENSLACP00000008909	Ubiquitin-like domain-containing protein.	Ribosomal protein L23a.	0.985
LOC102346166	RPL27A	ENSLACP00000003410	ENSLACP00000018889	Ubiquitin-like domain-containing protein.	Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	0.987
LOC102346166	RPL31	ENSLACP00000003410	ENSLACP00000015451	Ubiquitin-like domain-containing protein.	Ribosomal protein L31.	0.986
LOC102346166	RPL36	ENSLACP00000003410	ENSLACP00000017212	Ubiquitin-like domain-containing protein.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.986
LOC102346166	RPS10	ENSLACP00000003410	ENSLACP00000019580	Ubiquitin-like domain-containing protein.	Ribosomal protein S10.	0.987
LOC102346166	RPS15	ENSLACP00000003410	ENSLACP00000010875	Ubiquitin-like domain-containing protein.	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.988
LOC102346166	RPS2	ENSLACP00000003410	ENSLACP00000015049	Ubiquitin-like domain-containing protein.	Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.988
LOC102346166	RPS20	ENSLACP00000003410	ENSLACP00000004740	Ubiquitin-like domain-containing protein.	Ribosomal_S10 domain-containing protein.	0.986
LOC102346166	RPS3	ENSLACP00000003410	ENSLACP00000006908	Ubiquitin-like domain-containing protein.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.987