Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCINCalicin. (585 aa)    
Predicted Functional Partners:
SPACA1
Uncharacterized protein.
   
  
 0.861
SYT13
Synaptotagmin 13.
      
 0.792
LOC102357427
Spermatogenesis associated 18.
   
  
 0.789
TRIM42
Uncharacterized protein.
   
    0.759
RBX1
Ring-box 1.
    
 0.742
H3A1D7_LATCH
Uncharacterized protein.
      
 0.705
KBTBD12
Kelch repeat and BTB domain containing 12.
      
 0.689
FH
Fumarate hydratase.
      
 0.680
H3A0W3_LATCH
Si:ch211-63p21.8.
    
 0.668
TEKT4
Tektin 4.
   
  
 0.664
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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