STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP46Ubiquitin specific peptidase 46; Belongs to the peptidase C19 family. (366 aa)    
Predicted Functional Partners:
WDR48
WD repeat domain 48.
   
 0.952
SLC16A14
Solute carrier family 16 member 14.
   
  
 0.870
LOC102364024
Ligand of numb-protein X 2b.
      
 0.860
WDR20
WD repeat domain 20.
   
 0.844
DMWD
DM1 locus, WD repeat containing.
   
 0.844
FANCD2
FA complementation group D2.
    
 0.687
TRIP12
Thyroid hormone receptor interactor 12.
      
 0.673
RPS27A
Ribosomal protein S27a.
    
 0.651
PHLPP2
PH domain and leucine rich repeat protein phosphatase 2.
    
 
 0.642
LOC102346166
Ubiquitin-like domain-containing protein.
    
 0.640
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.