H3A1J1_LATCH protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H3A1J1_LATCH

WD_REPEATS_REGION domain-containing protein. (144 aa)

Predicted Functional Partners:

H3A9G4_LATCH

0.909

PAM16

0.899

CORO1C

0.804

CORO1A

0.797

CORO1B

0.736

KLHL28

0.583

CORO2A

0.575

KLHL20

0.509

LOC102353426

0.509

KBTBD8

0.487

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CORO1A	H3A1J1_LATCH	ENSLACP00000005160	ENSLACP00000003512	Coronin; Belongs to the WD repeat coronin family.	WD_REPEATS_REGION domain-containing protein.	0.797
CORO1B	H3A1J1_LATCH	ENSLACP00000008757	ENSLACP00000003512	Coronin; Belongs to the WD repeat coronin family.	WD_REPEATS_REGION domain-containing protein.	0.736
CORO1C	H3A1J1_LATCH	ENSLACP00000005426	ENSLACP00000003512	Coronin; Belongs to the WD repeat coronin family.	WD_REPEATS_REGION domain-containing protein.	0.804
CORO2A	H3A1J1_LATCH	ENSLACP00000009789	ENSLACP00000003512	Coronin; Belongs to the WD repeat coronin family.	WD_REPEATS_REGION domain-containing protein.	0.575
H3A1J1_LATCH	CORO1A	ENSLACP00000003512	ENSLACP00000005160	WD_REPEATS_REGION domain-containing protein.	Coronin; Belongs to the WD repeat coronin family.	0.797
H3A1J1_LATCH	CORO1B	ENSLACP00000003512	ENSLACP00000008757	WD_REPEATS_REGION domain-containing protein.	Coronin; Belongs to the WD repeat coronin family.	0.736
H3A1J1_LATCH	CORO1C	ENSLACP00000003512	ENSLACP00000005426	WD_REPEATS_REGION domain-containing protein.	Coronin; Belongs to the WD repeat coronin family.	0.804
H3A1J1_LATCH	CORO2A	ENSLACP00000003512	ENSLACP00000009789	WD_REPEATS_REGION domain-containing protein.	Coronin; Belongs to the WD repeat coronin family.	0.575
H3A1J1_LATCH	H3A9G4_LATCH	ENSLACP00000003512	ENSLACP00000006285	WD_REPEATS_REGION domain-containing protein.	Coronin 7.	0.909
H3A1J1_LATCH	KBTBD8	ENSLACP00000003512	ENSLACP00000012712	WD_REPEATS_REGION domain-containing protein.	Kelch repeat and BTB domain containing 8.	0.487
H3A1J1_LATCH	KLHL20	ENSLACP00000003512	ENSLACP00000011540	WD_REPEATS_REGION domain-containing protein.	Kelch like family member 20.	0.509
H3A1J1_LATCH	KLHL28	ENSLACP00000003512	ENSLACP00000001002	WD_REPEATS_REGION domain-containing protein.	Kelch like family member 28.	0.583
H3A1J1_LATCH	LOC102353426	ENSLACP00000003512	ENSLACP00000016817	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.509
H3A1J1_LATCH	PAM16	ENSLACP00000003512	ENSLACP00000005595	WD_REPEATS_REGION domain-containing protein.	Presequence translocase associated motor 16.	0.899
H3A9G4_LATCH	H3A1J1_LATCH	ENSLACP00000006285	ENSLACP00000003512	Coronin 7.	WD_REPEATS_REGION domain-containing protein.	0.909
H3A9G4_LATCH	PAM16	ENSLACP00000006285	ENSLACP00000005595	Coronin 7.	Presequence translocase associated motor 16.	0.899
KBTBD8	H3A1J1_LATCH	ENSLACP00000012712	ENSLACP00000003512	Kelch repeat and BTB domain containing 8.	WD_REPEATS_REGION domain-containing protein.	0.487
KBTBD8	KLHL20	ENSLACP00000012712	ENSLACP00000011540	Kelch repeat and BTB domain containing 8.	Kelch like family member 20.	0.527
KBTBD8	LOC102353426	ENSLACP00000012712	ENSLACP00000016817	Kelch repeat and BTB domain containing 8.	Uncharacterized protein.	0.575
KLHL20	H3A1J1_LATCH	ENSLACP00000011540	ENSLACP00000003512	Kelch like family member 20.	WD_REPEATS_REGION domain-containing protein.	0.509