Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H3A1K7_LATCHUncharacterized protein. (297 aa)    
Predicted Functional Partners:
LOC102348725
Uncharacterized protein.
 
  
   0.790
LOC102349920
Uncharacterized protein.
   
 0.563
H3B2N1_LATCH
NACHT domain-containing protein.
 
      0.549
TXNIP
Thioredoxin interacting protein.
    
 0.519
WDR90
WD repeat domain 90.
   
 0.495
SUGT1
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.
    
  0.469
LOC102354290
Uncharacterized protein.
    
   0.458
LOC102363742
Uncharacterized protein; Belongs to the peptidase C14A family.
   
 0.455
RPS27A
Ribosomal protein S27a.
    
  0.445
H3ABX3_LATCH
NACHT domain-containing protein.
 
      0.443
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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