H3A1K7_LATCH protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

H3A1K7_LATCH

Uncharacterized protein. (297 aa)

Predicted Functional Partners:

LOC102348725

0.782

H3B2N1_LATCH

0.549

TXNIP

0.454

H3ABX3_LATCH

0.443

RPS27A

0.435

USP14

0.433

CHUK

0.413

LOC102349920

0.413

H3B6K7_LATCH

0.413

SUGT1

0.406

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHUK	H3A1K7_LATCH	ENSLACP00000007128	ENSLACP00000003528	Component of inhibitor of nuclear factor kappa B kinase complex.	Uncharacterized protein.	0.413
CHUK	H3B2N1_LATCH	ENSLACP00000007128	ENSLACP00000016152	Component of inhibitor of nuclear factor kappa B kinase complex.	NACHT domain-containing protein.	0.413
CHUK	H3B6K7_LATCH	ENSLACP00000007128	ENSLACP00000017528	Component of inhibitor of nuclear factor kappa B kinase complex.	IKKbetaNEMObind domain-containing protein.	0.998
CHUK	RPS27A	ENSLACP00000007128	ENSLACP00000008678	Component of inhibitor of nuclear factor kappa B kinase complex.	Ribosomal protein S27a.	0.708
CHUK	USP14	ENSLACP00000007128	ENSLACP00000016665	Component of inhibitor of nuclear factor kappa B kinase complex.	Ubiquitin carboxyl-terminal hydrolase.	0.643
H3A1K7_LATCH	CHUK	ENSLACP00000003528	ENSLACP00000007128	Uncharacterized protein.	Component of inhibitor of nuclear factor kappa B kinase complex.	0.413
H3A1K7_LATCH	H3ABX3_LATCH	ENSLACP00000003528	ENSLACP00000007144	Uncharacterized protein.	NACHT domain-containing protein.	0.443
H3A1K7_LATCH	H3B2N1_LATCH	ENSLACP00000003528	ENSLACP00000016152	Uncharacterized protein.	NACHT domain-containing protein.	0.549
H3A1K7_LATCH	H3B6K7_LATCH	ENSLACP00000003528	ENSLACP00000017528	Uncharacterized protein.	IKKbetaNEMObind domain-containing protein.	0.413
H3A1K7_LATCH	LOC102348725	ENSLACP00000003528	ENSLACP00000003437	Uncharacterized protein.	Uncharacterized protein.	0.782
H3A1K7_LATCH	LOC102349920	ENSLACP00000003528	ENSLACP00000010067	Uncharacterized protein.	Uncharacterized protein.	0.413
H3A1K7_LATCH	RPS27A	ENSLACP00000003528	ENSLACP00000008678	Uncharacterized protein.	Ribosomal protein S27a.	0.435
H3A1K7_LATCH	SUGT1	ENSLACP00000003528	ENSLACP00000005253	Uncharacterized protein.	SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.	0.406
H3A1K7_LATCH	TXNIP	ENSLACP00000003528	ENSLACP00000014227	Uncharacterized protein.	Thioredoxin interacting protein.	0.454
H3A1K7_LATCH	USP14	ENSLACP00000003528	ENSLACP00000016665	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.433
H3ABX3_LATCH	H3A1K7_LATCH	ENSLACP00000007144	ENSLACP00000003528	NACHT domain-containing protein.	Uncharacterized protein.	0.443
H3B2N1_LATCH	CHUK	ENSLACP00000016152	ENSLACP00000007128	NACHT domain-containing protein.	Component of inhibitor of nuclear factor kappa B kinase complex.	0.413
H3B2N1_LATCH	H3A1K7_LATCH	ENSLACP00000016152	ENSLACP00000003528	NACHT domain-containing protein.	Uncharacterized protein.	0.549
H3B2N1_LATCH	H3B6K7_LATCH	ENSLACP00000016152	ENSLACP00000017528	NACHT domain-containing protein.	IKKbetaNEMObind domain-containing protein.	0.413
H3B2N1_LATCH	LOC102348725	ENSLACP00000016152	ENSLACP00000003437	NACHT domain-containing protein.	Uncharacterized protein.	0.905