Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
USP39Ubiquitin specific peptidase 39. (522 aa)    
Predicted Functional Partners:
PRPF8
Pre-mRNA processing factor 8.
   
 0.989
EFTUD2
Elongation factor Tu GTP binding domain containing 2.
   
 0.980
SNRNP40
Small nuclear ribonucleoprotein U5 subunit 40.
   
 0.973
CD2BP2
CD2 cytoplasmic tail binding protein 2.
    
   0.957
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
    
 0.948
DDX23
DEAD-box helicase 23; Belongs to the DEAD box helicase family.
   
 0.942
PRPF31
Pre-mRNA processing factor 31.
   
 0.934
SNRNP27
Small nuclear ribonucleoprotein U4/U6.U5 subunit 27.
   
 0.934
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.914
SNRPD2
Small nuclear ribonucleoprotein Sm D2.
    
 0.901
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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