Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H3A1S1_LATCHRUN domain-containing protein. (1123 aa)    
Predicted Functional Partners:
TRAPPC1
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
   0.772
H3A0V9_LATCH
DUF5595 domain-containing protein.
    
   0.734
TRAPPC5
Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
   0.732
H3AYX4_LATCH
Trafficking protein particle complex 9.
    
   0.724
TRAPPC2L
Trafficking protein particle complex 2 like.
    
   0.707
ZNF142
Zinc finger protein 142.
      
 0.700
MAP11
Microtubule associated protein 11.
    
 
 0.687
RUFY2
RUN and FYVE domain containing 2.
    
 
 0.663
STK36
Serine/threonine kinase 36.
      
 0.641
TRAPPC6B
Trafficking protein particle complex 6B.
    
   0.591
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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