STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102362583Phosphodiesterase. (865 aa)    
Predicted Functional Partners:
PDE6G
Phosphodiesterase 6G.
   
 0.736
PDE5A
Phosphodiesterase.
  
 
0.701
RNPEPL1
Arginyl aminopeptidase like 1.
     
 0.499
PDE7B
Phosphodiesterase.
   
0.442
PDE7A
Phosphodiesterase.
   
0.437
APAF1
Apoptotic peptidase activating factor 1.
      
 0.426
NFE2L2
Nuclear factor, erythroid 2 like 2.
      
 0.420
PDE1B
Phosphodiesterase.
    
0.417
PDE1C
Phosphodiesterase.
    
0.417
PDE1A
Phosphodiesterase.
    
0.417
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.