GGA3 protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GGA3

Golgi associated, gamma adaptin ear containing, ARF binding protein 3. (736 aa)

Predicted Functional Partners:

RABEP1

0.970

M6PR

0.937

H3ANU0_LATCH

0.885

IGF2R

0.885

ARF6

0.876

LOC102349333

0.876

RPS27A

0.846

CSTF3

0.760

SLC22A3

0.742

SPON1

0.740

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARF6	GGA3	ENSLACP00000005263	ENSLACP00000003686	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	0.876
ARF6	LOC102349333	ENSLACP00000005263	ENSLACP00000021262	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.900
CSTF3	GGA3	ENSLACP00000019671	ENSLACP00000003686	Cleavage stimulation factor subunit 3.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	0.760
CSTF3	SLC22A3	ENSLACP00000019671	ENSLACP00000022898	Cleavage stimulation factor subunit 3.	Solute carrier family 22 member 3.	0.744
CSTF3	SPON1	ENSLACP00000019671	ENSLACP00000000631	Cleavage stimulation factor subunit 3.	Spondin 1.	0.743
GGA3	ARF6	ENSLACP00000003686	ENSLACP00000005263	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	0.876
GGA3	CSTF3	ENSLACP00000003686	ENSLACP00000019671	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	Cleavage stimulation factor subunit 3.	0.760
GGA3	H3ANU0_LATCH	ENSLACP00000003686	ENSLACP00000011311	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	Uncharacterized protein.	0.885
GGA3	IGF2R	ENSLACP00000003686	ENSLACP00000023189	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	Uncharacterized protein.	0.885
GGA3	LOC102349333	ENSLACP00000003686	ENSLACP00000021262	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.876
GGA3	M6PR	ENSLACP00000003686	ENSLACP00000004503	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	Mannose-6-phosphate receptor, cation dependent.	0.937
GGA3	RABEP1	ENSLACP00000003686	ENSLACP00000020778	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	Rabaptin, RAB GTPase binding effector protein 1.	0.970
GGA3	RPS27A	ENSLACP00000003686	ENSLACP00000008678	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	Ribosomal protein S27a.	0.846
GGA3	SLC22A3	ENSLACP00000003686	ENSLACP00000022898	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	Solute carrier family 22 member 3.	0.742
GGA3	SPON1	ENSLACP00000003686	ENSLACP00000000631	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	Spondin 1.	0.740
H3ANU0_LATCH	GGA3	ENSLACP00000011311	ENSLACP00000003686	Uncharacterized protein.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	0.885
H3ANU0_LATCH	IGF2R	ENSLACP00000011311	ENSLACP00000023189	Uncharacterized protein.	Uncharacterized protein.	0.920
H3ANU0_LATCH	M6PR	ENSLACP00000011311	ENSLACP00000004503	Uncharacterized protein.	Mannose-6-phosphate receptor, cation dependent.	0.790
IGF2R	GGA3	ENSLACP00000023189	ENSLACP00000003686	Uncharacterized protein.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	0.885
IGF2R	H3ANU0_LATCH	ENSLACP00000023189	ENSLACP00000011311	Uncharacterized protein.	Uncharacterized protein.	0.920