Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LRRC55Leucine rich repeat containing 55. (283 aa)    
Predicted Functional Partners:
INPP5J
Inositol polyphosphate-5-phosphatase J.
      
 0.599
LRRC20
Leucine rich repeat containing 20.
      
 0.589
TCEANC2
Uncharacterized protein.
      
 0.513
LOC102362769
Protein tyrosine phosphatase receptor type Jb, tandem duplicate 2.
    
 0.493
CPN1
Carboxypeptidase N subunit 1.
     
  0.488
ASB8
Ankyrin repeat and SOCS box containing 8.
    
 0.486
ITGB1BP2
Integrin subunit beta 1 binding protein 2.
      
 0.470
HHATL
Hedgehog acyltransferase like; Belongs to the membrane-bound acyltransferase family.
      
 0.466
SBK1
Serine/threonine-protein kinase SBK1; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
      
 0.453
IQCA1
IQ motif containing with AAA domain 1.
    
 
 0.450
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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