Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRDM6PR/SET domain 6. (519 aa)    
Predicted Functional Partners:
CBFA2T2
CBFA2/RUNX1 partner transcriptional co-repressor 2.
    
 
 0.965
PRDM14
PR/SET domain 14.
    
 0.958
SYCE3
Synaptonemal complex central element protein 3.
    
   0.789
CAMKMT
Calmodulin-lysine N-methyltransferase.
     
  0.650
PLOD1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
     
  0.650
PLOD2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.
     
  0.650
CBFA2T3
Uncharacterized protein.
    
 
 0.612
RUNX1T1
RUNX1 partner transcriptional co-repressor 1.
    
 
 0.612
SRF
Serum response factor.
      
 0.612
PSTPIP2
Proline-serine-threonine phosphatase interacting protein 2.
      
 0.610
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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