Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LRP11Uncharacterized protein. (400 aa)    
Predicted Functional Partners:
THSD4
Thrombospondin type 1 domain containing 4.
 
      0.821
ADAMTS5
ADAM metallopeptidase with thrombospondin type 1 motif 5.
 
   
  0.797
H3B3T5_LATCH
ADAMTS like 5.
 
   
  0.794
ADAMTSL5
ADAMTS like 5.
 
   
  0.783
ADAMTS6
ADAM metallopeptidase with thrombospondin type 1 motif 6.
 
   
  0.667
ADAMTSL1
Uncharacterized protein.
 
   
  0.613
SUOX
Sulfite oxidase.
      
 0.582
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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