STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBE2L6UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (144 aa)    
Predicted Functional Partners:
UBE2V2-2
Ubiquitin-conjugating enzyme E2 variant 2.
   
 0.996
UBE2V1
UBIQUITIN_CONJUGAT_2 domain-containing protein.
   
 0.996
UBE3A
Ubiquitin-protein ligase E3A; E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates.
    
 0.976
TRIP12
Thyroid hormone receptor interactor 12.
   
 0.946
TSTA3
Tissue specific transplantation antigen P35B.
 
 
 
 0.900
SMURF2
E3 ubiquitin-protein ligase.
    
 0.898
ITCH
E3 ubiquitin-protein ligase.
    
 0.897
RNF31
Uncharacterized protein.
   
 0.891
RNF217
RBR-type E3 ubiquitin transferase.
    
 0.882
ARIH2
RBR-type E3 ubiquitin transferase.
   
 0.865
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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