STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMIM4Small integral membrane protein 4. (84 aa)    
Predicted Functional Partners:
TMEM223
Transmembrane protein 223.
   
  
 0.566
OXA1L
OXA1L mitochondrial inner membrane protein.
      
 0.529
NGRN
Neugrin, neurite outgrowth associated.
      
 0.426
DDX28
DEAD-box helicase 28.
      
 0.420
MRM3
Mitochondrial rRNA methyltransferase 3.
      
 0.420
TIMMDC1
Translocase of inner mitochondrial membrane domain containing 1.
      
 0.420
MALSU1
Mitochondrial assembly of ribosomal large subunit 1.
      
 0.420
SPG7
SPG7 matrix AAA peptidase subunit, paraplegin.
      
 0.420
GTPBP10
GTP binding protein 10.
      
 0.420
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.