Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC106706281Metalloendopeptidase. (540 aa)    
Predicted Functional Partners:
H3B782_LATCH
Si:ch211-157b11.8.
      
 0.547
LOC102357431
Uncharacterized protein.
      
 0.529
LOC102353191
Si:ch211-237i5.4.
     
 0.497
CHRD
Chordin; Belongs to the chordin family.
    
 
 0.494
MACROD1
Uncharacterized protein.
      
 0.440
SLIT2
Slit guidance ligand 2.
      
 0.435
PPA1
Pyrophosphatase (inorganic) 1.
      
 0.427
CTNS
Cystinosin, lysosomal cystine transporter.
      
 0.427
CCBE1
Collagen and calcium binding EGF domains 1.
      
 0.425
FGGY
FGGY carbohydrate kinase domain containing.
     
 0.408
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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