Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H3A2N7_LATCHZgc:154075. (358 aa)    
Predicted Functional Partners:
ALDH18A1
Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.
   
 
 0.602
RGN
Regucalcin.
  
 
 0.591
RALGAPB
Ral GTPase activating protein non-catalytic beta subunit.
    
   0.532
KARS1
Lysine--tRNA ligase.
  
    0.495
LOC102356272
Lysine--tRNA ligase.
  
    0.495
CPOX
Coproporphyrinogen oxidase.
   
 
 0.474
SORD
Sorbitol dehydrogenase.
  
 
 0.457
NKIRAS1
NFKB inhibitor interacting Ras like 1.
    
   0.439
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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