Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PUDPPseudouridine 5'-phosphatase. (231 aa)    
Predicted Functional Partners:
PGGHG
Protein-glucosylgalactosylhydroxylysine glucosidase.
  
 
 0.902
GPI
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 0.882
AGXT
Serine--pyruvate aminotransferase.
    
 0.881
PGM3
Phosphoglucomutase 3.
  
 0.864
PNPLA4
PNPLA domain-containing protein.
      
 0.862
EIF2S3
Eukaryotic translation initiation factor 2, subunit 3 gamma.
   
  
 0.813
CPPED1
Metallophos domain-containing protein.
  
  
 0.803
YIPF6
Protein YIPF.
    
 0.801
ADHFE1
Alcohol dehydrogenase iron containing 1.
    
 0.789
MPI
Mannose-6-phosphate isomerase.
    
 0.762
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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