LLPH protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LLPH

LLP homolog, long-term synaptic facilitation factor. (126 aa)

Predicted Functional Partners:

CCDC59

0.877

RPL30

0.803

ZNF593

0.737

NOP16

0.722

H3B787_LATCH

0.672

NHP2

0.664

NMD3

0.652

GNL2

0.638

RSL24D1

0.635

RPL37A

0.621

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCDC59	LLPH	ENSLACP00000018901	ENSLACP00000003961	Coiled-coil domain containing 59.	LLP homolog, long-term synaptic facilitation factor.	0.877
GNL2	H3B787_LATCH	ENSLACP00000019325	ENSLACP00000017758	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	Ribosomal_L14e domain-containing protein.	0.893
GNL2	LLPH	ENSLACP00000019325	ENSLACP00000003961	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	LLP homolog, long-term synaptic facilitation factor.	0.638
GNL2	NHP2	ENSLACP00000019325	ENSLACP00000019522	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.630
GNL2	NMD3	ENSLACP00000019325	ENSLACP00000006459	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.	0.938
GNL2	RPL30	ENSLACP00000019325	ENSLACP00000010657	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	Ribosomal protein L30.	0.915
GNL2	RPL37A	ENSLACP00000019325	ENSLACP00000013146	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	Ribosomal protein L37a.	0.953
GNL2	RSL24D1	ENSLACP00000019325	ENSLACP00000015926	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	Ribosomal L24 domain containing 1.	0.998
GNL2	ZNF593	ENSLACP00000019325	ENSLACP00000004794	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	Zinc finger protein 593.	0.990
H3B787_LATCH	GNL2	ENSLACP00000017758	ENSLACP00000019325	Ribosomal_L14e domain-containing protein.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.893
H3B787_LATCH	LLPH	ENSLACP00000017758	ENSLACP00000003961	Ribosomal_L14e domain-containing protein.	LLP homolog, long-term synaptic facilitation factor.	0.672
H3B787_LATCH	NHP2	ENSLACP00000017758	ENSLACP00000019522	Ribosomal_L14e domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.747
H3B787_LATCH	NMD3	ENSLACP00000017758	ENSLACP00000006459	Ribosomal_L14e domain-containing protein.	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.	0.896
H3B787_LATCH	RPL30	ENSLACP00000017758	ENSLACP00000010657	Ribosomal_L14e domain-containing protein.	Ribosomal protein L30.	0.999
H3B787_LATCH	RPL37A	ENSLACP00000017758	ENSLACP00000013146	Ribosomal_L14e domain-containing protein.	Ribosomal protein L37a.	0.999
H3B787_LATCH	RSL24D1	ENSLACP00000017758	ENSLACP00000015926	Ribosomal_L14e domain-containing protein.	Ribosomal L24 domain containing 1.	0.945
H3B787_LATCH	ZNF593	ENSLACP00000017758	ENSLACP00000004794	Ribosomal_L14e domain-containing protein.	Zinc finger protein 593.	0.873
LLPH	CCDC59	ENSLACP00000003961	ENSLACP00000018901	LLP homolog, long-term synaptic facilitation factor.	Coiled-coil domain containing 59.	0.877
LLPH	GNL2	ENSLACP00000003961	ENSLACP00000019325	LLP homolog, long-term synaptic facilitation factor.	Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.	0.638
LLPH	H3B787_LATCH	ENSLACP00000003961	ENSLACP00000017758	LLP homolog, long-term synaptic facilitation factor.	Ribosomal_L14e domain-containing protein.	0.672