STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCGNSecretagogin, EF-hand calcium binding protein. (272 aa)    
Predicted Functional Partners:
SNAP25
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.873
LOC102351536
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 0.755
CASK
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
    
 0.711
WDR90
WD repeat domain 90.
   
 0.594
GUCA1B
Uncharacterized protein.
    
 0.560
VSX1
Visual system homeobox 1.
      
 0.554
MAGI3
Membrane associated guanylate kinase, WW and PDZ domain containing 3.
   
 0.554
SIK3
SIK family kinase 3.
   
 0.545
SNAP23
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
    
 0.528
DCLK1
Doublecortin like kinase 1; Belongs to the protein kinase superfamily.
   
 0.484
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.