STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCARB2Scavenger receptor class B member 2; Belongs to the CD36 family. (375 aa)    
Predicted Functional Partners:
CD63
Tetraspanin.
     
 0.918
LOC102361086
Tetraspanin.
     
 0.908
APOB
Apolipoprotein B.
    
 0.842
LOC102365063
Apolipoprotein A-IV b, tandem duplicate 2.
    
 0.742
TFRC
Transferrin receptor.
   
 
 0.726
THBS1
Thrombospondin 1.
   
 
 0.725
LYN
Tyrosine-protein kinase.
    
 
 0.707
VAMP7
Vesicle associated membrane protein 7; Belongs to the synaptobrevin family.
     
 0.700
LOC102358653
Tetraspanin.
   
 0.651
VAMP3
Vesicle associated membrane protein 3.
   
  0.646
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.