STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3A2Y1_LATCHUncharacterized protein. (427 aa)    
Predicted Functional Partners:
CYBA
Cytochrome b-245 alpha chain.
    
 0.823
NCF2
Neutrophil cytosolic factor 2.
   
 0.747
NOXA1
NADPH oxidase activator 1.
   
 0.747
NOX4
NADPH oxidase 4.
   
 0.669
NOX5
NADPH oxidase 5.
   
 0.649
DUOX2
Dual oxidase 2.
   
 0.590
CYBB
Cytochrome b-245 beta chain.
   
 0.517
NOX3
NADPH oxidase 3.
   
 0.517
XK
XK-related protein.
   
 0.517
NOX1
NADPH oxidase 1.
   
 0.517
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.