Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC102355957Zgc:77375. (411 aa)    
Predicted Functional Partners:
PDK3
Protein-serine/threonine kinase.
   
   0.782
LOC102356421
ISY1 splicing factor homolog.
 
    
 0.629
TCEANC2
Uncharacterized protein.
      
 0.587
RAB43
RAB43, member RAS oncogene family.
   
  
 0.560
HSPD1
Heat shock protein family D (Hsp60) member 1; Belongs to the chaperonin (HSP60) family.
  
   0.465
PDK4
Protein-serine/threonine kinase.
   
   0.459
PDK2
Protein-serine/threonine kinase.
   
   0.459
UQCRC1
Ubiquinol-cytochrome c reductase core protein 1.
   
  
 0.457
CECR2
CECR2 histone acetyl-lysine reader.
      
 0.451
PPM1K
Protein phosphatase, Mg2+/Mn2+ dependent 1K.
   
  
 0.437
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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