STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATG4BCysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (396 aa)    
Predicted Functional Partners:
GABARAPL1
GABA type A receptor associated protein like 1.
   
 0.995
GABARAPL2
GABA type A receptor associated protein like 2.
   
 0.995
GABARAPL1-2
Uncharacterized protein.
   
 0.995
ULK2
Unc-51 like autophagy activating kinase 2.
   
 
 0.944
ULK1
Unc-51 like autophagy activating kinase 1.
   
 
 0.917
ATG3
Autophagy-related protein 3.
   
 
 0.915
MAP1LC3B
Microtubule-associated protein 1 light chain 3 beta.
   
 0.887
MAP1LC3A
Microtubule associated protein 1 light chain 3 alpha.
   
 0.887
ATG7
Autophagy related 7.
   
 
 0.853
ATG5
Autophagy protein 5; Involved in autophagic vesicle formation.
   
 
 0.852
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.