Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAD23BRAD23 homolog B, nucleotide excision repair protein. (412 aa)    
Predicted Functional Partners:
XPC
XPC complex subunit, DNA damage recognition and repair factor.
   
 0.943
NGLY1
N-glycanase 1.
    
 0.940
PSMC1
Proteasome 26S subunit, ATPase 1; Belongs to the AAA ATPase family.
   
 0.924
XPA
XPA, DNA damage recognition and repair factor.
    
 0.919
ATXN3
Ataxin 3.
    
 0.898
GTF2H3
General transcription factor IIH subunit 3.
    
 0.884
PSMD14
Proteasome 26S subunit, non-ATPase 14.
   
 0.871
VCP
Valosin containing protein.
   
 0.870
ERCC2
ERCC excision repair 2, TFIIH core complex helicase subunit.
    
 0.868
TRIP12
Thyroid hormone receptor interactor 12.
    
 0.866
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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