Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NKX3-2NK3 homeobox 2. (282 aa)    
Predicted Functional Partners:
PAX1
Paired box 1.
    
 
 0.686
FOXF2
Forkhead box F2a.
   
 0.660
PAX9
Paired box 9.
    
 
 0.653
FOXF1
Forkhead box F1.
   
 0.649
TCF21
Transcription factor 21.
    
 0.615
BARX1
BARX homeobox 1.
   
  
 0.608
HAND2
Heart and neural crest derivatives expressed 2.
    
 0.604
MOSPD1
Motile sperm domain containing 1.
      
 0.584
HOXB6
Homeobox B6.
    
 
 0.519
TAL1
TAL bHLH transcription factor 1, erythroid differentiation factor.
    
 0.499
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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