Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PTBP1Polypyrimidine tract binding protein 1. (560 aa)    
Predicted Functional Partners:
HNRNPK
Heterogeneous nuclear ribonucleoprotein K.
   
 0.939
HNRNPA2B1
Heterogeneous nuclear ribonucleoprotein A2/B1.
   
 0.922
HNRNPC
RRM domain-containing protein.
   
 0.920
ELAVL1
ELAV-like protein; Belongs to the RRM elav family.
   
 0.895
HNRNPD
Heterogeneous nuclear ribonucleoprotein D.
   
 0.835
HNRNPAB
Heterogeneous nuclear ribonucleoprotein A/B.
   
 0.835
HNRNPDL
Heterogeneous nuclear ribonucleoprotein D like.
   
 0.832
U2AF2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.823
HNRNPLL
Heterogeneous nuclear ribonucleoprotein L like.
   
 0.798
LOC102349114
RRM domain-containing protein.
   
 0.798
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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