Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H3A377_LATCHDUF4371 domain-containing protein. (359 aa)    
Predicted Functional Partners:
YARS1
Tyrosine--tRNA ligase.
  
 
 0.766
EPRS1
Glutamyl-prolyl-tRNA synthetase.
  
 
 0.680
H3BDS2_LATCH
DUF4371 domain-containing protein.
  
     0.530
LARS1
Leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.526
H3A3E5_LATCH
Uncharacterized protein.
  
     0.506
MALSU1
Mitochondrial assembly of ribosomal large subunit 1.
  
 0.498
MARS1
Methionyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.468
QARS1
Glutaminyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.466
VARS2
Uncharacterized protein.
  
 
 0.441
VARS1
Valyl-tRNA synthetase.
  
 
 0.441
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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