Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
WDFY1WD repeat and FYVE domain containing 1. (410 aa)    
Predicted Functional Partners:
NUDCD1
NudC domain containing 1.
    
   0.819
AP1S3
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
 
   
 0.814
AP1S2
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
 
   
 0.754
TBC1D31
TBC1 domain family member 31.
     
 0.703
HMGB3
High mobility group box 3.
   
 0.647
WDFY3
Uncharacterized protein.
      
 0.639
RNPC3
RNA binding region (RNP1, RRM) containing 3.
    
 
 0.638
FIBP
FGF1 intracellular binding protein.
    
  0.638
VAMP8
Vesicle associated membrane protein 8.
    
 0.633
WDFY4
Uncharacterized protein.
      
 0.613
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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