STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC6Coiled-coil domain containing 6. (459 aa)    
Predicted Functional Partners:
PPP4C
Serine/threonine-protein phosphatase.
    
 
 0.660
RET
Ret proto-oncogene; Belongs to the protein kinase superfamily. Tyr protein kinase family.
      
 0.568
TST
Sulfurtransferase.
      
 0.556
CCDC120
Si:ch211-169p10.1.
      
 0.554
PDXDC1
Pyridoxal dependent decarboxylase domain containing 1.
      
 0.552
PPME1
Protein phosphatase methylesterase 1; Demethylates proteins that have been reversibly carboxymethylated.
      
 0.549
CCDC68
Coiled-coil domain containing 68.
      
 0.542
PPP2R1A
Protein phosphatase 2 scaffold subunit Aalpha.
    
 
 0.483
PPP2R1B
Protein phosphatase 2 scaffold subunit Abeta.
    
 
 0.483
LOC102350355
Uncharacterized protein.
    
 
 0.461
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.