Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCDC6Coiled-coil domain containing 6. (459 aa)    
Predicted Functional Partners:
PPP4C
Serine/threonine-protein phosphatase.
    
 
 0.965
PPP4R2
Protein phosphatase 4, regulatory subunit 2b.
    
 
 0.929
C1S
Complement C1s; Belongs to the peptidase S1 family.
    
   0.923
FBXO42
F-box protein 42.
    
 
 0.882
LOC102350355
Uncharacterized protein.
    
 
 0.851
LOC102349237
Uncharacterized protein.
    
 
 0.851
PPP4R1
Protein phosphatase 4 regulatory subunit 1.
    
 
 0.851
PPP2R1A
Protein phosphatase 2 scaffold subunit Aalpha.
    
 
 0.837
PPP2R1B
Protein phosphatase 2 scaffold subunit Abeta.
    
 
 0.837
CCDC120
Si:ch211-169p10.1.
      
 0.698
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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