ANKDD1B protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ANKDD1B

Ankyrin repeat and death domain containing 1B. (501 aa)

Predicted Functional Partners:

CDH24

0.793

TMEM30B

0.679

MOB3C

0.626

SPTAN1

0.582

PTEN

0.569

TPTE2

0.569

NRCAM

0.562

CHL1

0.562

L1CAM

0.562

NFASC

0.562

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANKDD1B	CDH24	ENSLACP00000004157	ENSLACP00000016661	Ankyrin repeat and death domain containing 1B.	Cadherin 24; Cadherins are calcium-dependent cell adhesion proteins.	0.793
ANKDD1B	CHL1	ENSLACP00000004157	ENSLACP00000006961	Ankyrin repeat and death domain containing 1B.	Cell adhesion molecule L1 like.	0.562
ANKDD1B	L1CAM	ENSLACP00000004157	ENSLACP00000013715	Ankyrin repeat and death domain containing 1B.	L1 cell adhesion molecule.	0.562
ANKDD1B	MOB3C	ENSLACP00000004157	ENSLACP00000016785	Ankyrin repeat and death domain containing 1B.	MOB kinase activator 3C.	0.626
ANKDD1B	NFASC	ENSLACP00000004157	ENSLACP00000016880	Ankyrin repeat and death domain containing 1B.	Neurofascin.	0.562
ANKDD1B	NRCAM	ENSLACP00000004157	ENSLACP00000001854	Ankyrin repeat and death domain containing 1B.	Neuronal cell adhesion molecule.	0.562
ANKDD1B	PTEN	ENSLACP00000004157	ENSLACP00000006424	Ankyrin repeat and death domain containing 1B.	Phosphatase and tensin homolog; Tumor suppressor. Acts as a dual-specificity protein phosphatase, dephosphorylating tyrosine-, serine- and threonine- phosphorylated proteins. Also acts as a lipid phosphatase. Belongs to the PTEN phosphatase protein family.	0.569
ANKDD1B	SPTAN1	ENSLACP00000004157	ENSLACP00000015698	Ankyrin repeat and death domain containing 1B.	Spectrin alpha, non-erythrocytic 1.	0.582
ANKDD1B	TMEM30B	ENSLACP00000004157	ENSLACP00000007953	Ankyrin repeat and death domain containing 1B.	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	0.679
ANKDD1B	TPTE2	ENSLACP00000004157	ENSLACP00000009025	Ankyrin repeat and death domain containing 1B.	Transmembrane phosphatase with tensin homology.	0.569
CDH24	ANKDD1B	ENSLACP00000016661	ENSLACP00000004157	Cadherin 24; Cadherins are calcium-dependent cell adhesion proteins.	Ankyrin repeat and death domain containing 1B.	0.793
CHL1	ANKDD1B	ENSLACP00000006961	ENSLACP00000004157	Cell adhesion molecule L1 like.	Ankyrin repeat and death domain containing 1B.	0.562
CHL1	NFASC	ENSLACP00000006961	ENSLACP00000016880	Cell adhesion molecule L1 like.	Neurofascin.	0.636
CHL1	SPTAN1	ENSLACP00000006961	ENSLACP00000015698	Cell adhesion molecule L1 like.	Spectrin alpha, non-erythrocytic 1.	0.465
L1CAM	ANKDD1B	ENSLACP00000013715	ENSLACP00000004157	L1 cell adhesion molecule.	Ankyrin repeat and death domain containing 1B.	0.562
L1CAM	NFASC	ENSLACP00000013715	ENSLACP00000016880	L1 cell adhesion molecule.	Neurofascin.	0.636
L1CAM	SPTAN1	ENSLACP00000013715	ENSLACP00000015698	L1 cell adhesion molecule.	Spectrin alpha, non-erythrocytic 1.	0.465
MOB3C	ANKDD1B	ENSLACP00000016785	ENSLACP00000004157	MOB kinase activator 3C.	Ankyrin repeat and death domain containing 1B.	0.626
NFASC	ANKDD1B	ENSLACP00000016880	ENSLACP00000004157	Neurofascin.	Ankyrin repeat and death domain containing 1B.	0.562
NFASC	CHL1	ENSLACP00000016880	ENSLACP00000006961	Neurofascin.	Cell adhesion molecule L1 like.	0.636