STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H3A3F8_LATCHUncharacterized protein. (381 aa)    
Predicted Functional Partners:
CWC25
CWC25 spliceosome associated protein homolog.
   
    0.533
C1orf109
Chromosome 1 open reading frame 109.
   
    0.533
LIX1
Limb and CNS expressed 1.
   
    0.531
LIX1L
Limb and CNS expressed 1 like.
   
    0.531
WFS1
Wolframin ER transmembrane glycoprotein.
    
 
 0.504
MOCS3
Adenylyltransferase and sulfurtransferase MOCS3; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers URM1 and MOCS2A. Its N-terminus first activates URM1 and MOCS2A as acyl- adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 and MOCS2A to form thiocarboxylation (- COSH) of their C-terminus. The reaction probably involves hydrogen sulfide [...]
   
  0.492
FAM20B
FAM20B glycosaminoglycan xylosylkinase.
   
 
  0.492
SLC17A8
Solute carrier family 17 member 8.
      
 0.487
ADGRV1
Adhesion G protein-coupled receptor V1.
    
 
 0.473
ARID4A
AT-rich interaction domain 4A.
    
 0.471
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
Server load: low (30%) [HD]