LOC102364515 protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC102364515

Uncharacterized protein. (221 aa)

Predicted Functional Partners:

KIT

0.967

FGFR3

0.821

RET

0.821

FGFR2

0.821

PDGFRA

0.821

TEK

0.821

KDR

0.821

H3AYQ4_LATCH

0.821

FGFR1

0.821

CSF1R

0.821

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSF1R	LOC102364515	ENSLACP00000016266	ENSLACP00000004204	Colony stimulating factor 1 receptor.	Uncharacterized protein.	0.821
FGFR1	FGFR3	ENSLACP00000015392	ENSLACP00000000638	Fibroblast growth factor receptor.	Fibroblast growth factor receptor.	0.833
FGFR1	LOC102364515	ENSLACP00000015392	ENSLACP00000004204	Fibroblast growth factor receptor.	Uncharacterized protein.	0.821
FGFR2	FGFR3	ENSLACP00000007448	ENSLACP00000000638	Fibroblast growth factor receptor.	Fibroblast growth factor receptor.	0.833
FGFR2	LOC102364515	ENSLACP00000007448	ENSLACP00000004204	Fibroblast growth factor receptor.	Uncharacterized protein.	0.821
FGFR3	FGFR1	ENSLACP00000000638	ENSLACP00000015392	Fibroblast growth factor receptor.	Fibroblast growth factor receptor.	0.833
FGFR3	FGFR2	ENSLACP00000000638	ENSLACP00000007448	Fibroblast growth factor receptor.	Fibroblast growth factor receptor.	0.833
FGFR3	LOC102364515	ENSLACP00000000638	ENSLACP00000004204	Fibroblast growth factor receptor.	Uncharacterized protein.	0.821
H3AYQ4_LATCH	LOC102364515	ENSLACP00000014775	ENSLACP00000004204	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Uncharacterized protein.	0.821
KDR	LOC102364515	ENSLACP00000011126	ENSLACP00000004204	Kinase insert domain receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Uncharacterized protein.	0.821
KIT	LOC102364515	ENSLACP00000004383	ENSLACP00000004204	KIT proto-oncogene, receptor tyrosine kinase; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Uncharacterized protein.	0.967
LOC102364515	CSF1R	ENSLACP00000004204	ENSLACP00000016266	Uncharacterized protein.	Colony stimulating factor 1 receptor.	0.821
LOC102364515	FGFR1	ENSLACP00000004204	ENSLACP00000015392	Uncharacterized protein.	Fibroblast growth factor receptor.	0.821
LOC102364515	FGFR2	ENSLACP00000004204	ENSLACP00000007448	Uncharacterized protein.	Fibroblast growth factor receptor.	0.821
LOC102364515	FGFR3	ENSLACP00000004204	ENSLACP00000000638	Uncharacterized protein.	Fibroblast growth factor receptor.	0.821
LOC102364515	H3AYQ4_LATCH	ENSLACP00000004204	ENSLACP00000014775	Uncharacterized protein.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.821
LOC102364515	KDR	ENSLACP00000004204	ENSLACP00000011126	Uncharacterized protein.	Kinase insert domain receptor; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.821
LOC102364515	KIT	ENSLACP00000004204	ENSLACP00000004383	Uncharacterized protein.	KIT proto-oncogene, receptor tyrosine kinase; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.967
LOC102364515	PDGFRA	ENSLACP00000004204	ENSLACP00000010339	Uncharacterized protein.	Uncharacterized protein.	0.821
LOC102364515	RET	ENSLACP00000004204	ENSLACP00000004888	Uncharacterized protein.	Ret proto-oncogene; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.821