STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PKD1Polycystin 1, transient receptor potential channel interacting. (4241 aa)    
Predicted Functional Partners:
PKD2
Polycystin 2, transient receptor potential cation channel.
    
0.963
PKD2L1
Polycystin 2 like 1, transient receptor potential cation channel.
    
0.787
PKD2L2
Polycystin 2 like 2, transient receptor potential cation channel.
    
0.682
H3AYN1_LATCH
Uncharacterized protein.
    
 0.599
EXOC5
Exocyst complex component 5.
     
 0.574
NPHP3
Nephronophthisis 3.
      
 0.550
EXOC4
Exocyst complex component 4.
     
 0.507
RAB3IL1
RAB3A interacting protein like 1.
     
 0.498
TSC2
TSC complex subunit 2.
   
  
 0.492
PKHD1
PKHD1 ciliary IPT domain containing fibrocystin/polyductin.
      
 0.487
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.