Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H3A3R5_LATCHUncharacterized protein. (56 aa)    
Predicted Functional Partners:
ELOC
Elongin C; Belongs to the SKP1 family.
   
 
 0.798
CUL5
Cullin 5; Belongs to the cullin family.
    
 
 0.796
RILPL2
Rab interacting lysosomal protein like 2.
    
 
 0.670
H3A535_LATCH
CHM Rab escort protein.
    
 0.649
MTHFSD
Methenyltetrahydrofolate synthetase domain containing.
   
    0.615
RAB3IL1
RAB3A interacting protein like 1.
    
 0.597
WDR6
WD repeat domain 6.
   
    0.590
SNU13
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 
  0.589
UTP15
UTP15 small subunit processome component.
   
    0.586
NIPSNAP2
Nipsnap homolog 2.
   
 
  0.581
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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