Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
H3A459_LATCHUncharacterized protein. (123 aa)    
Predicted Functional Partners:
CNIH1
Cornichon family AMPA receptor auxiliary protein 1.
      
 0.630
SYNDIG1
Synapse differentiation inducing 1.
      
 0.599
SSR2
Signal sequence receptor subunit 2.
      
 0.562
TMEM91
Transmembrane protein 91.
      
 0.540
SYNDIG1L
Synapse differentiation inducing 1 like.
      
 0.540
H3A1D7_LATCH
Uncharacterized protein.
      
 0.467
CACNG1
Voltage-dependent calcium channel gamma-1 subunit; Regulatory subunit of the voltage-gated calcium channel that gives rise to L-type calcium currents in skeletal muscle. Regulates channel inactivation kinetics.
      
 0.454
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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