Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAB3GAP1RAB3 GTPase activating protein catalytic subunit 1. (1006 aa)    
Predicted Functional Partners:
RAB3GAP2
RAB3 GTPase activating non-catalytic protein subunit 2.
   
 0.999
DMXL2
Dmx like 2.
   
 
 0.918
VAPB
VAMP associated protein B and C.
    
 
 0.911
RAB18
RAB18A, member RAS oncogene family.
    
 0.830
LOC102352866
RAB18B, member RAS oncogene family.
    
 0.830
VAPA
VAMP associated protein A.
    
 
 0.802
DMXL1
Dmx like 1.
   
 
 0.793
H3A535_LATCH
CHM Rab escort protein.
   
 
 0.788
RABGGTA
Rab geranylgeranyltransferase subunit alpha.
      
 0.690
TBC1D31
TBC1 domain family member 31.
   
 
 0.686
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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