Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DBX2Developing brain homeobox 2. (238 aa)    
Predicted Functional Partners:
IRX3
Iroquois homeobox 3.
    
 
 0.732
PRDM13
PR/SET domain 13.
    
 
 0.581
OLIG2
Oligodendrocyte transcription factor 2.
   
  
 0.554
MIDN
Midnolin.
      
 0.530
ZC4H2
Zinc finger C4H2-type containing.
      
 0.497
LHX5
LIM homeobox 5.
    
 0.433
LHX1
LIM homeobox 1.
    
 0.433
H3AU65_LATCH
Phospholipase A(2).
      
 0.427
ISL2
ISL LIM homeobox 2.
    
 0.423
GSX1
GS homeobox 1.
    
 
 0.404
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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