ST6GAL2 protein (Latimeria chalumnae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ST6GAL2

ST6 beta-galactoside alpha-2,6-sialyltransferase 2; Belongs to the glycosyltransferase 29 family. (509 aa)

Predicted Functional Partners:

B4GALT2

0.958

LOC102355730

0.923

H2ZY94_LATCH

0.923

B4GALT3

0.923

SETD4

0.913

ST3GAL3

0.911

H3ACT0_LATCH

0.902

ST8SIA1

0.738

SLC37A3

0.662

ST8SIA2

0.649

Your Current Organism:

Latimeria chalumnae

NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B4GALT2	B4GALT3	ENSLACP00000008948	ENSLACP00000005833	Beta-1,4-galactosyltransferase 2.	Uncharacterized protein.	0.581
B4GALT2	H2ZY94_LATCH	ENSLACP00000008948	ENSLACP00000002365	Beta-1,4-galactosyltransferase 2.	Si:dkey-199f5.8.	0.581
B4GALT2	H3ACT0_LATCH	ENSLACP00000008948	ENSLACP00000007451	Beta-1,4-galactosyltransferase 2.	Uncharacterized protein; Belongs to the glycosyltransferase 29 family.	0.977
B4GALT2	LOC102355730	ENSLACP00000008948	ENSLACP00000000060	Beta-1,4-galactosyltransferase 2.	Uncharacterized protein.	0.581
B4GALT2	ST3GAL3	ENSLACP00000008948	ENSLACP00000017627	Beta-1,4-galactosyltransferase 2.	ST3 beta-galactoside alpha-2,3-sialyltransferase 3; Belongs to the glycosyltransferase 29 family.	0.948
B4GALT2	ST6GAL2	ENSLACP00000008948	ENSLACP00000004470	Beta-1,4-galactosyltransferase 2.	ST6 beta-galactoside alpha-2,6-sialyltransferase 2; Belongs to the glycosyltransferase 29 family.	0.958
B4GALT3	B4GALT2	ENSLACP00000005833	ENSLACP00000008948	Uncharacterized protein.	Beta-1,4-galactosyltransferase 2.	0.581
B4GALT3	H2ZY94_LATCH	ENSLACP00000005833	ENSLACP00000002365	Uncharacterized protein.	Si:dkey-199f5.8.	0.902
B4GALT3	H3ACT0_LATCH	ENSLACP00000005833	ENSLACP00000007451	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyltransferase 29 family.	0.940
B4GALT3	LOC102355730	ENSLACP00000005833	ENSLACP00000000060	Uncharacterized protein.	Uncharacterized protein.	0.902
B4GALT3	ST3GAL3	ENSLACP00000005833	ENSLACP00000017627	Uncharacterized protein.	ST3 beta-galactoside alpha-2,3-sialyltransferase 3; Belongs to the glycosyltransferase 29 family.	0.935
B4GALT3	ST6GAL2	ENSLACP00000005833	ENSLACP00000004470	Uncharacterized protein.	ST6 beta-galactoside alpha-2,6-sialyltransferase 2; Belongs to the glycosyltransferase 29 family.	0.923
H2ZY94_LATCH	B4GALT2	ENSLACP00000002365	ENSLACP00000008948	Si:dkey-199f5.8.	Beta-1,4-galactosyltransferase 2.	0.581
H2ZY94_LATCH	B4GALT3	ENSLACP00000002365	ENSLACP00000005833	Si:dkey-199f5.8.	Uncharacterized protein.	0.902
H2ZY94_LATCH	H3ACT0_LATCH	ENSLACP00000002365	ENSLACP00000007451	Si:dkey-199f5.8.	Uncharacterized protein; Belongs to the glycosyltransferase 29 family.	0.940
H2ZY94_LATCH	LOC102355730	ENSLACP00000002365	ENSLACP00000000060	Si:dkey-199f5.8.	Uncharacterized protein.	0.902
H2ZY94_LATCH	ST3GAL3	ENSLACP00000002365	ENSLACP00000017627	Si:dkey-199f5.8.	ST3 beta-galactoside alpha-2,3-sialyltransferase 3; Belongs to the glycosyltransferase 29 family.	0.935
H2ZY94_LATCH	ST6GAL2	ENSLACP00000002365	ENSLACP00000004470	Si:dkey-199f5.8.	ST6 beta-galactoside alpha-2,6-sialyltransferase 2; Belongs to the glycosyltransferase 29 family.	0.923
H3ACT0_LATCH	B4GALT2	ENSLACP00000007451	ENSLACP00000008948	Uncharacterized protein; Belongs to the glycosyltransferase 29 family.	Beta-1,4-galactosyltransferase 2.	0.977
H3ACT0_LATCH	B4GALT3	ENSLACP00000007451	ENSLACP00000005833	Uncharacterized protein; Belongs to the glycosyltransferase 29 family.	Uncharacterized protein.	0.940