Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAB23RAB23, member RAS oncogene family. (237 aa)    
Predicted Functional Partners:
ARL3
ADP ribosylation factor like GTPase 3; Belongs to the small GTPase superfamily. Arf family.
    
 0.901
CPLANE2
Ciliogenesis and planar polarity effector 2.
    
 0.894
INTU
Inturned planar cell polarity protein.
    
 
 0.844
ARL13B
ADP ribosylation factor like GTPase 13B.
      
 0.841
IFT22
Intraflagellar transport 22.
      
 0.749
GLI3
GLI family zinc finger 3.
    
 0.745
PLPPR1
Phospholipid phosphatase related 1.
    
   0.698
H3A466_LATCH
ADP-ribosylation factor-like 2; Belongs to the small GTPase superfamily. Arf family.
      
 0.635
H3A535_LATCH
CHM Rab escort protein.
     
 0.610
KIF17
Kinesin family member 17; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.605
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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