Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LIN28BLin-28 homolog B. (279 aa)    
Predicted Functional Partners:
CDK2AP2
Cyclin dependent kinase 2 associated protein 2.
      
 0.791
LIN28A
Lin-28 homolog A.
   
   0.762
TUT4
Terminal uridylyl transferase 4.
    
 0.727
RPL3
Ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
   
   0.725
DROSHA
Drosha ribonuclease III.
   
 
 0.667
H3A652_LATCH
Uncharacterized protein.
      
 0.643
IGF2BP3
Insulin like growth factor 2 mRNA binding protein 3.
   
 
 0.637
ARHGAP15
Rho GTPase activating protein 15.
      
 0.636
CASP9
Caspase 9; Belongs to the peptidase C14A family.
    
 
 0.635
H2ZZC6_LATCH
Sm domain-containing protein.
   
  0.631
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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