Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MDP1Si:dkeyp-27c8.2. (164 aa)    
Predicted Functional Partners:
PDCD6IP
Programmed cell death 6 interacting protein.
    
 0.962
LOC102356960
Charged multivesicular body protein 3.
    
 0.839
CHMP2B
Charged multivesicular body protein 2B.
    
 0.825
SYT17
Synaptotagmin 17.
    
   0.804
CHMP2A
Charged multivesicular body protein 2A.
   
 0.795
PTPN23
Protein tyrosine phosphatase non-receptor type 23.
    
 0.779
CHMP5
Charged multivesicular body protein 5.
   
 0.763
H3ANE5_LATCH
BRO1 domain-containing protein.
    
 0.757
VPS4B
Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family.
    
 0.728
VPS4A
Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family.
    
 0.728
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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