STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MDP1Si:dkeyp-27c8.2. (164 aa)    
Predicted Functional Partners:
PDCD6IP
Programmed cell death 6 interacting protein.
    
 0.917
PTPN23
Protein tyrosine phosphatase non-receptor type 23.
    
 0.899
H3ANE5_LATCH
BRO1 domain-containing protein.
    
 0.890
IST1
IST1 factor associated with ESCRT-III.
     
 0.636
CHMP2A
Charged multivesicular body protein 2A.
     
 0.628
CHMP6
Charged multivesicular body protein 6.
     
 0.625
CHMP2B
Charged multivesicular body protein 2B.
     
 0.599
BROX
BRO1 domain and CAAX motif containing.
    
 0.570
LOC102356960
Charged multivesicular body protein 3.
    
 0.566
RHPN2
Rhophilin Rho GTPase binding protein 2.
    
 0.560
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.