STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LDB3LIM domain binding 3. (589 aa)    
Predicted Functional Partners:
IFT57
Intraflagellar transport 57.
    
 0.599
H3AYN1_LATCH
Uncharacterized protein.
   
  
 0.579
TRAF3IP1
TRAF3 interacting protein 1.
    
 0.578
CASK
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
    
 0.570
IFT80
Intraflagellar transport 80.
    
 0.565
IFT88
Intraflagellar transport 88.
    
 0.532
MYOZ2
Myozenin 2.
   
  
 0.521
IFT81
Intraflagellar transport 81.
    
 0.504
LDB1
LIM domain binding 1.
    
 
 0.498
IFT52
Intraflagellar transport 52.
    
 0.482
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.