Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PVALBParvalbumin alpha; In muscle, parvalbumin is thought to be involved in relaxation after contraction. It binds two calcium ions (By similarity). (112 aa)    
Predicted Functional Partners:
SST
Somatostatin.
      
 0.946
CALB2
Calbindin 2.
      
 0.941
SDF4
Stromal cell derived factor 4.
      
 0.896
GAD1
Glutamate decarboxylase 1.
   
 
 0.886
CCK
Cholecystokinin.
   
  
 0.827
DCX
Uncharacterized protein.
     
 0.821
ACAN
Aggrecan.
    
 
 0.799
NPY
Neuropeptide Y.
      
 0.791
MBP
Myelin basic protein.
    
 
 0.730
MECP2
Methyl-CpG binding protein 2.
     
 0.729
Your Current Organism:
Latimeria chalumnae
NCBI taxonomy Id: 7897
Other names: L. chalumnae, coelacanth
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